@string{jasa="Journal of the American Statistical Association"}
@string{jrssa="Journal of the Royal Statistical Society, Series A"}
@string{jrssb="Journal of the Royal Statistical Society, Series B"}

@Article{leek:storey:2007,
	Author = "Leek, J.T. and Storey, J.D.",
	Title = "Capturing Heterogeneity in Gene Expression Studies by `Surrogate Variable Analysis'",
	Journal = "PLoS Genetics 3:e161",
	Year = 2007,
}

@Article{leek:storey:2008,
	Author = "Leek, J.T. and Storey, J.D.",
	Title = "A general framework for multiple testing dependence",
	Journal = "Proceedings of the National Academy of Sciences 105:18718-18723",
	Year = 2008,
}

@Article{buja:eyuboglu:1992,
	Author = "Buja A. and Eyuboglu N.",
	Title = " Remarks on parrallel analysis",
	Journal = "Multivariate Behavioral Research, 27(4), 509-540",
	Year = 1992,
}

% 20838408 
@Article{leek:2010aa,
   Author="Leek, J. T.  and Scharpf, R. B.  and Bravo, H. C.  and Simcha, D.  and Langmead, B.  and Johnson, W. E.  and Geman, D.  and Baggerly, K.  and Irizarry, R. A. ",
   Title="{{T}ackling the widespread and critical impact of batch effects in high-throughput data}",
   Journal="Nat. Rev. Genet.",
   Year="2010",
   Volume="11",
   Pages="733--739",
   Month="Oct"
}


@article{gagnon2012using,
  title={Using control genes to correct for unwanted variation in microarray data},
  author={Gagnon-Bartsch, Johann A and Speed, Terence P},
  journal={Biostatistics},
  volume={13},
  number={3},
  pages={539--552},
  year={2012},
  publisher={Biometrika Trust}
}



% 15173019 
@Article{dyrskjot:2004aa,
   Author="Dyrskjot, L.  and Kruhoffer, M.  and Thykjaer, T.  and Marcussen, N.  and Jensen, J. L.  and Moller, K.  and Orntoft, T. F. ",
   Title="{{G}ene expression in the urinary bladder: a common carcinoma in situ gene expression signature exists disregarding histopathological classification}",
   Journal="Cancer Res.",
   Year="2004",
   Volume="64",
   Pages="4040--4048",
   Month="Jun"
}


% 20560929 
@Article{leek:2011aa,
   Author="Leek, J. T. ",
   Title="{{A}symptotic conditional singular value decomposition for high-dimensional genomic data}",
   Journal="Biometrics",
   Year="2011",
   Volume="67",
   Pages="344--352",
   Month="Jun"
}

@ARTICLE{johnson:2007aa,
  author = {W.E. Johnson and C. Li and A. Rabinovic},
  title = {Adjusting batch effects in microarray data using empirical Bayes
	methods},
  journal = {Biostatistics},
  year = {2007},
  volume = {8},
  pages = {118--127},
  number = {1}
}

@article{zhang2018alternative,
  title={Alternative empirical Bayes models for adjusting for batch effects in genomic studies},
  author={Zhang, Yuqing and Jenkins, David F and Manimaran, Solaiappan and Johnson, W Evan},
  journal={BMC bioinformatics},
  volume={19},
  number={1},
  pages={262},
  year={2018},
  publisher={BioMed Central}
}
