Package: BiocIO
Title: Standard Input and Output for Bioconductor Packages
Version: 1.22.0
Authors@R: c(
    person("Martin", "Morgan", role = "aut"),
    person("Michael", "Lawrence", role = "aut"),
    person("Daniel", "Van Twisk", role = "aut"),
    person("Marcel", "Ramos", , "marcel.ramos@sph.cuny.edu",
        "cre", c(ORCID = "0000-0002-3242-0582")
    ))
Description: The `BiocIO` package contains high-level abstract classes
    and generics used by developers to build IO funcionality within the
    Bioconductor suite of packages. Implements `import()` and `export()`
    standard generics for importing and exporting biological data formats.
    `import()` supports whole-file as well as chunk-wise iterative import. The
    `import()` interface optionally provides a standard mechanism for
    'lazy' access via `filter()` (on row or element-like components of
    the file resource), `select()` (on column-like components of the
    file resource) and `collect()`. The `import()` interface
    optionally provides transparent access to remote (e.g. via https)
    as well as local access. Developers can register a file extension,
    e.g., `.loom` for dispatch from character-based URIs to specific
    `import()` / `export()` methods based on classes representing file
    types, e.g., `LoomFile()`.
License: Artistic-2.0
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Depends: R (>= 4.3.0)
Imports: BiocGenerics, S4Vectors, methods, tools
Suggests: testthat, knitr, rmarkdown, BiocStyle
Collate: 'BiocFile.R' 'import_export.R' 'compression.R' 'utils.R'
VignetteBuilder: knitr
biocViews: Annotation,DataImport
BugReports: https://github.com/Bioconductor/BiocIO/issues
Date: 2024-11-21
git_url: https://git.bioconductor.org/packages/BiocIO
git_branch: RELEASE_3_23
git_last_commit: eabf6c7
git_last_commit_date: 2026-04-28
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28
NeedsCompilation: no
Packaged: 2026-04-28 20:53:00 UTC; biocbuild
Author: Martin Morgan [aut],
  Michael Lawrence [aut],
  Daniel Van Twisk [aut],
  Marcel Ramos [cre] (ORCID: <https://orcid.org/0000-0002-3242-0582>)
Maintainer: Marcel Ramos <marcel.ramos@sph.cuny.edu>
