kallisto (0.51.1+dfsg-2) unstable; urgency=medium

  [ Adrian Bunk ]
  * Do not build with -march=native
    Closes: #1128956

  [ Andreas Tille ]
  * Update standards version to 4.7.4, no changes needed.
  * d/rules: Remove core dump from failed test to not make it into the
    resulting package.  The proper fix would certainly be to fix the test!)

 -- Andreas Tille <tille@debian.org>  Sat, 23 May 2026 14:39:43 +0200

kallisto (0.51.1+dfsg-1) unstable; urgency=medium

  [ Andreas Tille ]
  * New upstream version
  * Standards-Version: 4.7.3
  * Add support for loongarch64 in d/control
    Closes: #1057131
  * Remove patch Check_busOptions.seq_length_before_accessing.patch that is
    missing from debian/patches/series.
  * Fix build with CMake 4
    Closes: #1113067
  * d/watch: version=5
  * Cleanup properly after build time test + fix clean target
    Closes: #1047324
  * debputy lint --auto-fix (routine-update)
  * Try hard to get bifrost build with recent gcc
  * bifrost: Add default values for MAX_KMER_SIZE and MAX_GMER_SIZE
  * Fix typo in bifrost
  * Do not build in parallel

  [ Michael R. Crusoe ]
  * d/control: simplify architecture specifications by using provisions
    from the architecture-properties package.
  * d/rules: change dh_auto_test rule from an override to an
    execute_after to remove the need to check DEB_BUILD_OPTIONS.
  * Upstream has forked bifrost, use their copy instead.
  * d/rules: need cmake option needed: USE_BAM.

 -- Andreas Tille <tille@debian.org>  Sun, 22 Feb 2026 17:01:24 +0100

kallisto (0.48.0+dfsg-4) unstable; urgency=medium

  [ Vagrant Cascadian ]
  * Remove quant_out/run_info.json to enable reproducible-builds
    Closes: #1004053

 -- Andreas Tille <tille@debian.org>  Wed, 12 Apr 2023 07:44:19 +0200

kallisto (0.48.0+dfsg-3) unstable; urgency=medium

  * Packaging update
  * Standards-Version: 4.6.1 (routine-update)
  * debhelper-compat 13 (routine-update)

 -- Andreas Tille <tille@debian.org>  Thu, 06 Oct 2022 11:17:52 +0200

kallisto (0.48.0+dfsg-2) unstable; urgency=medium

  * Team upload.
  * Preventing volatile test outputs from appearing in kallisto-examples
    binary package (Closes: #1004053). Thanks Vagrant Cascadian.
  * Limiting kallisto builds to 64bit architectures as 32bit are not supported.

 -- Andrius Merkys <merkys@debian.org>  Thu, 20 Jan 2022 02:09:50 -0500

kallisto (0.48.0+dfsg-1) unstable; urgency=medium

  * Team upload.
  * New upstream version 0.48.0+dfsg
  * Enabling function and snakemake tests.
  * Bumping copyright years.
  * Refreshing patches, disabling
    Check_busOptions.seq_length_before_accessing.patch (integrated upstream).

 -- Andrius Merkys <merkys@debian.org>  Wed, 19 Jan 2022 02:36:58 -0500

kallisto (0.46.2+dfsg-3) unstable; urgency=medium

  * Team Upload.
  * debian/patches/gcc11.patch: Fix gcc-11 FTBFS (Closes: #984073)

 -- Nilesh Patra <nilesh@debian.org>  Thu, 04 Mar 2021 23:54:34 +0530

kallisto (0.46.2+dfsg-2) unstable; urgency=medium

  * Team upload
  * Patch to avoid segfault (Closes: #960368)

 -- Pranav Ballaney <ballaneypranav@gmail.com>  Sat, 16 May 2020 04:47:12 +0530

kallisto (0.46.2+dfsg-1) unstable; urgency=medium

  * Team upload.
  * New upstream version
  * Standards-Version: 4.5.0 (routine-update)
  * Add salsa-ci file (routine-update)
  * Rules-Requires-Root: no (routine-update)
  * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
    Repository-Browse.
  * Remove obsolete field Name from debian/upstream/metadata (already
    present in machine-readable debian/copyright).

 -- Steffen Moeller <moeller@debian.org>  Fri, 15 May 2020 13:12:09 +0200

kallisto (0.46.1+dfsg-2) unstable; urgency=medium

  * Team upload.
  * mark kallisto-examples as Multi-Arch: foreign
  * debian/patches/spelling: fix typo
  * debian/patches/htslib1.3: use kseq.h from htslib, not the bundled version

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Wed, 25 Dec 2019 12:05:55 +0100

kallisto (0.46.1+dfsg-1) unstable; urgency=medium

  * Team upload.
  * New upstream version

 -- Steffen Moeller <moeller@debian.org>  Fri, 08 Nov 2019 23:14:36 +0100

kallisto (0.46.0+dfsg-1) unstable; urgency=medium

  * New upstream version
  * debhelper-compat 12
  * Standards-Version: 4.4.0

 -- Andreas Tille <tille@debian.org>  Wed, 07 Aug 2019 13:01:05 +0200

kallisto (0.45.1+dfsg-1) unstable; urgency=medium

  * Initial release (Closes: #925417)

 -- Andreas Tille <tille@debian.org>  Sun, 24 Mar 2019 21:53:40 +0100
