Gnumed.business.gmHospitalStay API documentation
Description: GNUmed hospital stay business object …

# Module `Gnumed.business.gmHospitalStay`

GNUmed hospital stay business object.

license: GPL v2 or later

## Functions

`def create_hospital_stay(encounter: int = None, episode: int = None, fk_org_unit: int = None) ‑> cHospitalStay`
  Expand source code

      def create_hospital_stay(encounter:int=None, episode:int=None, fk_org_unit:int=None) -> cHospitalStay:
              SQL = 'INSERT INTO clin.hospital_stay (fk_encounter, fk_episode, fk_org_unit) VALUES (%(enc)s, %(epi)s, %(fk_org_unit)s) RETURNING pk'
              args = {'enc': encounter, 'epi': episode, 'fk_org_unit': fk_org_unit}
              queries = [{'sql': SQL, 'args': args}]
              rows = gmPG2.run_rw_queries(queries = queries, return_data = True)
              return cHospitalStay(aPK_obj = rows[0][0])

`def delete_hospital_stay(stay: int = None)`
  Expand source code

      def delete_hospital_stay(stay:int=None):
              cmd = 'DELETE FROM clin.hospital_stay WHERE pk = %(pk)s'
              args = {'pk': stay}
              gmPG2.run_rw_queries(queries = [{'sql': cmd, 'args': args}])
              return True

`def get_latest_patient_hospital_stay(patient: int = None) ‑> cHospitalStay | None`
  Expand source code

      def get_latest_patient_hospital_stay(patient:int=None) -> cHospitalStay | None:
              """Actually, the stay with the most recent admission."""
              SQL = _SQL_get_hospital_stays % "pk_patient = %(pat)s ORDER BY admission DESC LIMIT 1"
              queries = [{'sql': SQL, 'args': {'pat': patient}}]
              rows = gmPG2.run_ro_queries(queries = queries)
              if not rows:
                      return None

              return cHospitalStay(row = {'data': rows[0], 'pk_field': 'pk_hospital_stay'})

  Actually, the stay with the most recent admission.

`def get_patient_hospital_stays(patient: int = None, ongoing_only: bool = False, return_pks: bool = False) ‑> list[cHospitalStay]`
  Expand source code

      def get_patient_hospital_stays(patient:int=None, ongoing_only:bool=False, return_pks:bool=False) -> list[cHospitalStay]:
              args = {'pat': patient}
              if ongoing_only:
                      SQL = _SQL_get_hospital_stays % "pk_patient = %(pat)s AND discharge is NULL ORDER BY admission"
              else:
                      SQL = _SQL_get_hospital_stays % "pk_patient = %(pat)s ORDER BY admission"
              queries = [{'sql': SQL, 'args': args}]
              rows = gmPG2.run_ro_queries(queries = queries)
              if return_pks:
                      return [ r['pk_hospital_stay'] for r in rows ]

              return [ cHospitalStay(row = {'data': r, 'pk_field': 'pk_hospital_stay'})  for r in rows ]

## Classes

`class cHospitalStay (aPK_obj: int | dict = None, row: dict = None, link_obj=None)`
  Expand source code

      class cHospitalStay(gmBusinessDBObject.cBusinessDBObject):

              _cmd_fetch_payload = _SQL_get_hospital_stays % "pk_hospital_stay = %s"
              _cmds_store_payload = [
                      """UPDATE clin.hospital_stay SET
                                      clin_when = %(admission)s,
                                      discharge = %(discharge)s,
                                      fk_org_unit = %(pk_org_unit)s,
                                      narrative = gm.nullify_empty_string(%(comment)s),
                                      fk_episode = %(pk_episode)s,
                                      fk_encounter = %(pk_encounter)s
                              WHERE
                                      pk = %(pk_hospital_stay)s
                                              AND
                                      xmin = %(xmin_hospital_stay)s
                              RETURNING
                                      xmin AS xmin_hospital_stay
                              """
              ]
              _updatable_fields = [
                      'admission',
                      'discharge',
                      'pk_org_unit',
                      'pk_episode',
                      'pk_encounter',
                      'comment'
              ]

              #--------------------------------------------------------
              def format_maximum_information(self, patient=None):
                      return self.format (
                              include_procedures = True,
                              include_docs = True
                      ).split('\n')

              #-------------------------------------------------------
              def format(self, left_margin=0, include_procedures=False, include_docs=False, include_episode=True):

                      if self._payload['discharge']:
                              discharge = ' - %s' % self._payload['discharge'].strftime('%Y %b %d')
                      else:
                              discharge = ''

                      episode = ''
                      if include_episode:
                              episode = ': %s%s%s' % (
                                      gmTools.u_left_double_angle_quote,
                                      self._payload['episode'],
                                      gmTools.u_right_double_angle_quote
                              )

                      lines = ['%s%s%s (%s@%s)%s' % (
                              ' ' * left_margin,
                              self._payload['admission'].strftime('%Y %b %d'),
                              discharge,
                              self._payload['ward'],
                              self._payload['hospital'],
                              episode
                      )]

                      if include_docs:
                              for doc in self.documents:
                                      lines.append('%s%s: %s\n' % (
                                              ' ' * left_margin,
                                              _('Document'),
                                              doc.format(single_line = True)
                                      ))

                      return '\n'.join(lines)

              #--------------------------------------------------------
              def _get_documents(self):
                      return [ gmDocuments.cDocument(aPK_obj = pk_doc) for pk_doc in  self._payload['pk_documents'] ]

              documents = property(_get_documents)

  Represents business objects in the database.

  ## Rules

  - instances ARE ASSUMED TO EXIST in the database
  - PK construction (aPK_obj): DOES verify its existence on instantiation (fetching data fails)
  - Row construction (row): allowed by using a dict of pairs of field name: field value (PERFORMANCE improvement)
  - does NOT verify FK target existence
  - does NOT create new entries in the database
  - does NOT lazy-fetch fields on access

  Class scope SQL commands and variables:

  _cmd_fetch_payload:

  - must return exactly one row
  - WHERE clause argument values are expected in self.pk_obj (taken from init(aPK_obj))
  - must return xmin of all rows that _cmds_store_payload will be updating, so views must support the xmin columns of their underlying tables

  _cmds_store_payload:

  - one or multiple "update … set … where xmin_ = … and pk = …" statements which actually update the database from the data in self._payload,
  - the last query must refetch at least the XMIN values needed to detect concurrent updates, their field names had better be the same as in _cmd_fetch_payload,
  - the last query CAN return other fields which is particularly useful when those other fields are computed in the backend and may thus change upon save but will not have been set by the client code explicitly - this is only really of concern if the saved subclass is to be reused after saving rather than re-instantiated
  - when subclasses tend to live a while after save_payload() was called and they support computed fields (say, _(some_column) you need to return all columns (see cEncounter)

  _updatable_fields:

  - a list of fields available for update via object['field']

  Call init from child classes like so:

          super().__init__(aPK_obj = aPK_obj, row = row, link_obj = link_obj)

  ## Args

  `aPK_obj`
    retrieve data from backend
  - an scalar value the ._cmd_fetch_payload WHERE condition must be a simple column: "… WHERE pk_col = %s"
  - a dictionary of values the ._cmd_fetch_payload WHERE condition must consume the dictionary and produce a unique row
  `row`
    must hold the fields
  - data: list of column values for the row selected by ._cmd_fetch_payload (as returned by cursor.fetchone() in the DB-API)
  - pk_field: the name of the primary key column OR
  - pk_obj: a dictionary suitable for being passed to cursor.execute and holding the primary key values, used for composite PKs
  - for example:

        row = {
                'data': rows[0],
                'pk_field': 'pk_XXX (the PK column name)',
                'pk_obj': {'pk_col1': pk_col1_val, 'pk_col2': pk_col2_val}
        }

        rows = gmPG2.run_ro_queries(queries = [{'sql': cmd, 'args': args}])
        objects = [ cChildClass(row = {'data': r, 'pk_field': 'the PK column name'}) for r in rows ]

  ### Ancestors

  - cBusinessDBObject

  ### Instance variables

  `prop documents`
    Expand source code

        def _get_documents(self):
                return [ gmDocuments.cDocument(aPK_obj = pk_doc) for pk_doc in  self._payload['pk_documents'] ]

  ### Methods

  `def format_maximum_information(self, patient=None)`
    Expand source code

        def format_maximum_information(self, patient=None):
                return self.format (
                        include_procedures = True,
                        include_docs = True
                ).split('\n')

  ### Inherited members

  - `cBusinessDBObject`:
    - `fields_as_dict`
    - `format`
    - `get_fields`
    - `get_patient`
    - `get_updatable_fields`
    - `is_modified`
    - `keys`
    - `patient_pk`
    - `refetch_payload`
    - `same_payload`
    - `save`
    - `save_payload`
    - `staff_id`