Gnumed.business.gmSOAPimporter API documentation
Description: GNUmed SOAP importer …

# Module `Gnumed.business.gmSOAPimporter`

GNUmed SOAP importer

(specification by Karsten Hilbert Karsten.Hilbert@gmx.net)

This script is designed for importing GNUmed SOAP input "bundles".

        - "bundle" is list of dicts
        - each "bundle" is processed dict by dict
        - the dicts in the list are INDEPENDENT of each other
        - each dict contains information for one new clin_narrative row
        - each dict has the keys: 'soap', 'types', 'text', 'clin_context'
                - 'soap':
                        - relates to clin_narrative.soap_cat
                - 'types':
                        - a list of strings
                        - the strings must be found in clin_item_type.type
                        - strings not found in clin_item_type.type are ignored during
                          import and the user is warned about that
                - 'text':
                        - the narrative for clin_narrative.narrative, imported as is
                - 'clin_context':
                        - 'clin_context' is a dictionary containing clinical
                          context information, required to properly create clinical items.
                          Its 'episode_id' must always be supplied.

## Classes

`class cSOAPImporter`
  Expand source code

      class cSOAPImporter:
              """
              Main SOAP importer class
              """
              #-----------------------------------------------------------
              def __init__(self):
                      pass
              #-----------------------------------------------------------
              # external API
              #-----------------------------------------------------------
              def import_soap(self, bundle=None):
                      """
                      Import supplied GNUmed SOAP input "bundle". For details consult current
                      module's description information.

                      @param bundle: GNUmed SOAP input data (as described in module's information)
                      @type bundle: list of dicts
                      """
                      # process each entry in soap bundle independently
                      for soap_entry in bundle:
                              if not self.__import_narrative(soap_entry):
                                      _log.error('skipping soap entry')
                                      continue
                      gmDispatcher.send(signal = 'clin_item_updated')
                      return True
              #-----------------------------------------------------------
              # internal helpers
              #-----------------------------------------------------------
              def __import_narrative(self, soap_entry):
                      """Import soap entry into GNUmed backend.

                      @param soap_entry: dictionary containing information related
                                                         to one SOAP input line
                      @type soap_entry: dictionary with keys 'soap', 'types', 'text'

                      FIXME: Later we may want to allow for explicitly setting a staff ID to be
                      FIXME: used for import. This would allow to import data "on behalf of" someone.
                      """
                      if not self.__verify_soap_entry(soap_entry=soap_entry):
                              _log.error('cannot verify soap entry')
                              return False
                      # obtain clinical context information
                      emr = gmPerson.gmCurrentPatient().emr
                      epi_id = soap_entry[soap_bundle_CLIN_CTX_KEY][soap_bundle_EPISODE_ID_KEY]
                      try:
                              enc_id = soap_entry[soap_bundle_CLIN_CTX_KEY][soap_bundle_ENCOUNTER_ID_KEY]
                      except KeyError:
                              enc = emr.active_encounter
                              enc_id = enc['pk_encounter']

                      # create narrative row
                      narr = gmClinNarrative.create_narrative_item (
                              narrative = soap_entry[soap_bundle_TEXT_KEY],
                              soap_cat = soap_entry[soap_bundle_SOAP_CAT_KEY],
                              episode_id = epi_id,
                              encounter_id = enc_id
                      )

      #               # attach types
      #               if soap_bundle_TYPES_KEY in soap_entry:
      #                       print "code missing to attach types to imported narrative"

                      return (narr is not None)
              #-----------------------------------------------------------
              def __verify_soap_entry(self, soap_entry):
                      """Perform basic integrity check of a supplied SOAP entry.

                      @param soap_entry: dictionary containing information related to one
                                                         SOAP input
                      @type soap_entry: dictionary with keys 'soap', 'types', 'text'
                      """
                      required_keys = [
                              soap_bundle_SOAP_CAT_KEY,
                              soap_bundle_CLIN_CTX_KEY,
                              soap_bundle_TEXT_KEY
                      ]
                      # verify key existence
                      for a_key in required_keys:
                              try:
                                      soap_entry[a_key]
                              except KeyError:
                                      _log.error('key [%s] is missing from soap entry' % a_key)
                                      _log.error('%s' % soap_entry)
                                      return False
                      # verify key *values*
                      if not soap_entry[soap_bundle_SOAP_CAT_KEY] in soap_bundle_SOAP_CATS:
                              _log.error('invalid soap category [%s]' % soap_entry[soap_bundle_SOAP_CAT_KEY])
                              _log.error('%s' % soap_entry)
                              return False
                      try:
                              soap_entry[soap_bundle_CLIN_CTX_KEY][soap_bundle_EPISODE_ID_KEY]
                      except KeyError:
                              _log.error('SOAP entry does not provide mandatory episode ID')
                              _log.error('%s' % soap_entry)
                              return False
                      return True
              #-----------------------------------------------------------

  Main SOAP importer class

  ### Methods

  `def import_soap(self, bundle=None)`
    Expand source code

        def import_soap(self, bundle=None):
                """
                Import supplied GNUmed SOAP input "bundle". For details consult current
                module's description information.

                @param bundle: GNUmed SOAP input data (as described in module's information)
                @type bundle: list of dicts
                """
                # process each entry in soap bundle independently
                for soap_entry in bundle:
                        if not self.__import_narrative(soap_entry):
                                _log.error('skipping soap entry')
                                continue
                gmDispatcher.send(signal = 'clin_item_updated')
                return True

    Import supplied GNUmed SOAP input "bundle". For details consult current module's description information.

    @param bundle: GNUmed SOAP input data (as described in module's information) @type bundle: list of dicts